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toTOW: Anyone else alive ?

Adanorm: I've patched the website. If you encounter any issue don't hesitate to contact me !

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Adanorm: :) and 200k visitors

jimerickson: Congratulations rhavern!

rhavern: Quad G34s rock. Mine puts out ~600kPPD.

MarkAGR: Uh? Just woke up from my winter hibernation ... Good Morning everyone! I nearly made it 23m over the winter! I think there's a quad cpu G34 machine on it's way.

toTOW: Anyone alive ?

toTOW: Happy new year to all fellow folders :)

warmon6: Look like the web site needs an update or 2. starting to see cob webs. (could at least mention about bigadv change happening in Jan. ;)

toTOW: Recredit has ben run ... all points should show up now :)

toTOW: Stats are down since the last network outage :(

MarkAGR: OK, so there's a 16 core minimum ... so does anyone know how to produce a 16 core virtual machine from a cluster of ubuntu boxes?

MarkAGR: Where did all thw stats go?

jimerickson: Http://bit.ly/tkpFnJ

jimerickson: 16 core minimum for bigadv. wow!

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jimerickson: Http://bit.ly/okqvf7

jimerickson: Happily folding smp now. and currently earning 2000ppd more than with bigadv. go figure.

jimerickson: I detest p2684, after this one is finished i am moving to smp.

Amaruk: FahCore 11 (ATI) support is scheduled to end September 1st. http://en.fah-addict.net/news/news.php?id=352

hootis: >toTow I think i saw it somewhere either on the folding forum or here, but i cant remember. just wondering if any1 knew.

toTOW: Divery> yes, a little ... on an i7 920 @3.5 GHz (no GPU), I get something like 15k PPD with regular SMP and 22k on BigAdv ...

toTOW: Hootis> did we mention it in one of our news ? anyway I don't remember :(


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Rss Peter Kasson
Dr. Peter Kasson, MD, PhD has been working in the group since 2005. Peter's interests are in the area of lipid vesicle fusion, a process relevant for many biological processes as well as relevant for disease and infection. Lipid vesicles are large assemblies of detergent-like molecules that are used to house and/or contain many different types of molecules in biology. Many viruses ("envelope viruses") are housed in lipid vesicles, but so are the neurotransmitters in our brains. In order for these containers to be shuttled around (eg as neurotransmitters transmit thoughts in the brain or when viruses try to enter cells) lipid vesicles fuse with other vesicles or with cells (which are like giant lipid vesicles since cell walls are made of lipids).


Fusion of Liposomes


Thus, membrane fusion provides the mechanism for the entry and infection by enveloped viruses such as influenza, Ebola, SARS, and HIV. Not surprisingly, the steps driving membrane fusion are the targets by which these critically important processes are regulated, and thus a fundamental understanding of membrane fusion mechanisms will enable the design of novel anti-viral drugs. When faced with the potential for rapidly emerging and highly virulent infections, such an understanding of fusion becomes of particular importance to both fundamental biology and national health.

Peter brings a diverse set of skills to the group. He has both a MD and a PhD in biophysics, which makes him particularly well suited to study lipid vesicle fusion from both a biophysical (eg model membrane systems) and a medical (eg looking at models for influenza infection) point of view. Peter also plays a large role in the infrastructure development for Folding@home. He is the lead developer for the SMP client & core and is constantly looking for ways to push FAH's capabilities in order to tackle these complex problems. Indeed, due to the very large size of lipid vesicle simulations (which can easily be 1 to 10 million atoms in size), the SMP client is extremely important to this research.

Peter has already had several papers accepted in peer review with his work from FAH, examining the biophysical nature of lipid vesicle fusion as well as studying the protein-membrane interactions involved in the fusion caused by the influenza virus. Finally, what many people may not realize is that a large aspect of lipid vesicle fusion in biology involves protein conformational change and/or some sort of folding. Indeed, in influenza, there is a small peptide (HA) which likely goes through some folding process during fusion and subsequently this new HA peptide conformation leads to a change in the host membrane, making it more susceptible to fusion, leading to influenza infection, and thus getting the flu.
Studying this process brings together many aspects of what we've learned in FAH and builds on top a lot of our previous work, especially in peptide folding and MSM creation.

Copied from: Meet FAH Team member Dr. Peter Kasson (Vijay Pande's blog)
 
 
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Written by: jmn, On: 09/09/09